Detailed information of SNP:
|
SNP ID:
sf0406990468(Gbrowse)
Chromosome: chr04 Position: 6990468 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 74.28% | 25.72% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406990468 | C->T | LOC_Os04g12620(LOC_Os04g12620.1) | Synonymous |