Detailed information of SNP:
|
SNP ID:
sf0406990571(Gbrowse)
Chromosome: chr04 Position: 6990571 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 57.94% | 42.06% |
| All Indica | 795 | 96.35% | 3.65% |
| All Japonica | 492 | 0.41% | 99.59% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 65 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406990571 | G->A | LOC_Os04g12620(LOC_Os04g12620.1) | Non-Synonymous SNP |