Detailed information of SNP:
|
SNP ID:
sf0406996046(Gbrowse)
Chromosome: chr04 Position: 6996046 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 91.90% | 8.10% |
| All Indica | 789 | 86.69% | 13.31% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 37 | 91.89% | 8.11% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 204 | 69.61% | 30.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406996046 | T->G | LOC_Os04g12639(LOC_Os04g12639.1) | INTRON |