Detailed information of SNP:
|
SNP ID:
sf0406996854(Gbrowse)
Chromosome: chr04 Position: 6996854 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 93.95% | 6.05% |
| All Indica | 784 | 89.92% | 10.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 201 | 76.62% | 23.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0406996854 | A->G | LOC_Os04g12639(LOC_Os04g12639.1) | INTRON |