Detailed information of SNP:
|
SNP ID:
sf0407003631(Gbrowse)
Chromosome: chr04 Position: 7003631 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 66.01% | 33.99% |
| All Indica | 798 | 45.61% | 54.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 20.00% | 80.00% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407003631 | A->G | INTERGENIC | None |