Detailed information of SNP:
|
SNP ID:
sf0407009217(Gbrowse)
Chromosome: chr04 Position: 7009217 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 63.08% | 36.92% |
| All Indica | 790 | 93.67% | 6.33% |
| All Japonica | 487 | 18.48% | 81.52% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 204 | 89.71% | 10.29% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 87 | 85.06% | 14.94% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407009217 | C->T | INTERGENIC | None |