Detailed information of SNP:
|
SNP ID:
sf0407020017(Gbrowse)
Chromosome: chr04 Position: 7020017 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 65.75% | 34.25% |
| All Indica | 795 | 40.00% | 60.00% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 21.60% | 78.40% |
| Indica II | 211 | 48.34% | 51.66% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407020017 | G->A | INTERGENIC | None |