Detailed information of SNP:
|
SNP ID:
sf0407062613(Gbrowse)
Chromosome: chr04 Position: 7062613 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1308 | 51.38% | 48.62% |
| All Indica | 706 | 25.35% | 74.65% |
| All Japonica | 485 | 94.64% | 5.36% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 330 | 32.12% | 67.88% |
| Indica II | 196 | 17.35% | 82.65% |
| Indica Intermediate | 180 | 21.67% | 78.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 84 | 72.62% | 27.38% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407062613 | G->A | INTERGENIC | None |