Detailed information of SNP:
|
SNP ID:
sf0407063893(Gbrowse)
Chromosome: chr04 Position: 7063893 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 96.60% | 3.40% |
| All Indica | 796 | 97.86% | 2.14% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407063893 | C->T | INTERGENIC | None |