Detailed information of SNP:
|
SNP ID:
sf0407091942(Gbrowse)
Chromosome: chr04 Position: 7091942 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1294 | 64.30% | 35.70% |
| All Indica | 685 | 44.09% | 55.91% |
| All Japonica | 492 | 96.14% | 3.86% |
| Aus | 64 | 43.75% | 56.25% |
| Indica I | 307 | 52.44% | 47.56% |
| Indica II | 196 | 36.22% | 63.78% |
| Indica Intermediate | 182 | 38.46% | 61.54% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407091942 | A->G | INTERGENIC | None |