Detailed information of SNP:
|
SNP ID:
sf0407093330(Gbrowse)
Chromosome: chr04 Position: 7093330 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 75.19% | 24.81% |
| All Indica | 794 | 65.24% | 34.76% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 75.47% | 24.53% |
| Indica II | 211 | 53.08% | 46.92% |
| Indica Intermediate | 208 | 59.13% | 40.87% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407093330 | A->G | INTERGENIC | None |