Detailed information of SNP:
|
SNP ID:
sf0407106162(Gbrowse)
Chromosome: chr04 Position: 7106162 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 59.93% | 40.07% |
| All Indica | 791 | 57.14% | 42.86% |
| All Japonica | 495 | 68.08% | 31.92% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 371 | 67.12% | 32.88% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 208 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 64.18% | 35.82% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407106162 | A->G | INTERGENIC | None |