Detailed information of SNP:
|
SNP ID:
sf0407113856(Gbrowse)
Chromosome: chr04 Position: 7113856 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 65.97% | 34.03% |
| All Indica | 793 | 98.61% | 1.39% |
| All Japonica | 484 | 7.85% | 92.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 83 | 15.66% | 84.34% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407113856 | T->C | LOC_Os04g12880(LOC_Os04g12880.1) | INTRON |