Detailed information of SNP:
|
SNP ID:
sf0407121523(Gbrowse)
Chromosome: chr04 Position: 7121523 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1341 | 66.00% | 34.00% |
| All Indica | 762 | 43.44% | 56.56% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 34 | 91.18% | 8.82% |
| Indica I | 363 | 20.66% | 79.34% |
| Indica II | 198 | 67.68% | 32.32% |
| Indica Intermediate | 201 | 60.70% | 39.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407121523 | T->C | INTERGENIC | None |