Detailed information of SNP:
|
SNP ID:
sf0407128069(Gbrowse)
Chromosome: chr04 Position: 7128069 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 64.70% | 35.30% |
| All Indica | 790 | 38.48% | 61.52% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 18.72% | 81.28% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 203 | 63.55% | 36.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407128069 | C->T | INTERGENIC | None |