Detailed information of SNP:



SNP ID: sf0407129147(Gbrowse)

Chromosome: chr04

Position: 7129147
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 72.59% 27.41%
All Indica799 99.62% 0.38%
All Japonica497 24.95% 75.05%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 7.46% 92.54%
Tropical Japonica94 91.49% 8.51%
Japonica Intermediate68 19.12% 80.88%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0407129147 C->T INTERGENIC None