Detailed information of SNP:
SNP ID:
sf0407129147(Gbrowse)
Chromosome: chr04 Position: 7129147 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 72.59% | 27.41% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 24.95% | 75.05% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 7.46% | 92.54% |
Tropical Japonica | 94 | 91.49% | 8.51% |
Japonica Intermediate | 68 | 19.12% | 80.88% |
Group VI/Aromatic | 14 | 78.57% | 21.43% |
Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0407129147 | C->T | INTERGENIC | None |