Detailed information of SNP:
|
SNP ID:
sf0407136118(Gbrowse)
Chromosome: chr04 Position: 7136118 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 52.55% | 47.45% |
| All Indica | 796 | 86.06% | 13.94% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 63 | 52.38% | 47.62% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407136118 | A->C | INTERGENIC | None |