Detailed information of SNP:
|
SNP ID:
sf0407146187(Gbrowse)
Chromosome: chr04 Position: 7146187 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.32% | 41.68% |
| All Indica | 798 | 41.10% | 58.90% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 20.53% | 79.47% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407146187 | T->C | LOC_Os04g12950(LOC_Os04g12950.1) | Non-Synonymous SNP |