Detailed information of SNP:
|
SNP ID:
sf0407207653(Gbrowse)
Chromosome: chr04 Position: 7207653 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407207653 | G->A | INTERGENIC | None |