Detailed information of SNP:
|
SNP ID:
sf0407226086(Gbrowse)
Chromosome: chr04 Position: 7226086 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.35% | 27.65% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 24.09% | 75.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 6.63% | 93.37% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407226086 | A->G | LOC_Os04g13100(LOC_Os04g13100.1) | Non-Synonymous SNP |