Detailed information of SNP:
|
SNP ID:
sf0407259584(Gbrowse)
Chromosome: chr04 Position: 7259584 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.81% | 28.19% |
| All Indica | 799 | 62.20% | 37.80% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407259584 | C->T | INTERGENIC | None |