Detailed information of SNP:
|
SNP ID:
sf0407266553(Gbrowse)
Chromosome: chr04 Position: 7266553 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 80.65% | 19.35% |
| All Indica | 791 | 70.80% | 29.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 372 | 85.22% | 14.78% |
| Indica II | 211 | 63.98% | 36.02% |
| Indica Intermediate | 208 | 51.92% | 48.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407266553 | G->A | LOC_Os04g13180(LOC_Os04g13180.1) | INTRON |