Detailed information of SNP:
|
SNP ID:
sf0407316140(Gbrowse)
Chromosome: chr04 Position: 7316140 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1273 | 91.04% | 8.96% |
| All Indica | 655 | 82.75% | 17.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 263 | 59.32% | 40.68% |
| Indica II | 201 | 99.00% | 1.00% |
| Indica Intermediate | 191 | 97.91% | 2.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407316140 | A->C | LOC_Os04g13220(LOC_Os04g13220.1) | INTRON |