Detailed information of SNP:



SNP ID: sf0407316140(Gbrowse)

Chromosome: chr04

Position: 7316140
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1273 91.04% 8.96%
All Indica655 82.75% 17.25%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I263 59.32% 40.68%
Indica II201 99.00% 1.00%
Indica Intermediate191 97.91% 2.09%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 97.50% 2.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0407316140 A->C LOC_Os04g13220(LOC_Os04g13220.1) INTRON