Detailed information of SNP:
|
SNP ID:
sf0407327510(Gbrowse)
Chromosome: chr04 Position: 7327510 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 67.14% | 32.86% |
| All Indica | 792 | 92.93% | 7.07% |
| All Japonica | 496 | 21.77% | 78.23% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 90.57% | 9.43% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407327510 | T->C | LOC_Os04g13240(LOC_Os04g13240.1) | Non-Synonymous SNP |