Detailed information of SNP:
|
SNP ID:
sf0407366165(Gbrowse)
Chromosome: chr04 Position: 7366165 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 97.73% | 2.27% |
| All Indica | 709 | 96.61% | 3.39% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 349 | 95.13% | 4.87% |
| Indica II | 186 | 99.46% | 0.54% |
| Indica Intermediate | 174 | 96.55% | 3.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407366165 | G->A | INTERGENIC | None |