Detailed information of SNP:
|
SNP ID:
sf0407377771(Gbrowse)
Chromosome: chr04 Position: 7377771 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.75% | 25.25% |
| All Indica | 799 | 61.70% | 38.30% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407377771 | A->T | INTERGENIC | None |