Detailed information of SNP:
|
SNP ID:
sf0407477450(Gbrowse)
Chromosome: chr04 Position: 7477450 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 60.52% | 39.48% |
| All Indica | 766 | 86.81% | 13.19% |
| All Japonica | 494 | 17.41% | 82.59% |
| Aus | 60 | 88.33% | 11.67% |
| Indica I | 361 | 93.07% | 6.93% |
| Indica II | 205 | 81.95% | 18.05% |
| Indica Intermediate | 200 | 80.50% | 19.50% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407477450 | T->C | LOC_Os04g13440(LOC_Os04g13440.1) | Non-Synonymous SNP |