Detailed information of SNP:
|
SNP ID:
sf0407486396(Gbrowse)
Chromosome: chr04 Position: 7486396 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.94% | 32.06% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407486396 | C->T | INTERGENIC | None |