Detailed information of SNP:
|
SNP ID:
sf0407560586(Gbrowse)
Chromosome: chr04 Position: 7560586 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 92.04% | 7.96% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 80.48% | 19.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407560586 | A->G | LOC_Os04g13550(LOC_Os04g13550.1) | INTRON |