Detailed information of SNP:
|
SNP ID:
sf0407623604(Gbrowse)
Chromosome: chr04 Position: 7623604 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 52.91% | 47.09% |
| All Indica | 763 | 24.51% | 75.49% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 353 | 31.44% | 68.56% |
| Indica II | 206 | 16.99% | 83.01% |
| Indica Intermediate | 204 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407623604 | A->T | INTERGENIC | None |