Detailed information of SNP:
|
SNP ID:
sf0407624093(Gbrowse)
Chromosome: chr04 Position: 7624093 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 91.14% | 8.86% |
| All Indica | 769 | 85.31% | 14.69% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 358 | 96.93% | 3.07% |
| Indica II | 211 | 62.09% | 37.91% |
| Indica Intermediate | 200 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407624093 | C->T | LOC_Os04g13660(LOC_Os04g13660.1) | Synonymous |