Detailed information of SNP:
|
SNP ID:
sf0407624309(Gbrowse)
Chromosome: chr04 Position: 7624309 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 71.89% | 28.11% |
| All Indica | 752 | 54.92% | 45.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 54.84% | 45.16% |
| Indica I | 354 | 54.80% | 45.20% |
| Indica II | 206 | 62.14% | 37.86% |
| Indica Intermediate | 192 | 47.40% | 52.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407624309 | T->C | LOC_Os04g13660(LOC_Os04g13660.1) | Synonymous |