Detailed information of SNP:
|
SNP ID:
sf0407624510(Gbrowse)
Chromosome: chr04 Position: 7624510 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 60.26% | 39.74% |
| All Indica | 769 | 35.11% | 64.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 355 | 42.25% | 57.75% |
| Indica II | 210 | 25.71% | 74.29% |
| Indica Intermediate | 204 | 32.35% | 67.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407624510 | A->T | INTERGENIC | None |