Detailed information of SNP:
|
SNP ID:
sf0407624771(Gbrowse)
Chromosome: chr04 Position: 7624771 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 69.37% | 30.63% |
| All Indica | 753 | 50.46% | 49.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 358 | 49.16% | 50.84% |
| Indica II | 194 | 56.19% | 43.81% |
| Indica Intermediate | 201 | 47.26% | 52.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407624771 | A->G | INTERGENIC | None |