Detailed information of SNP:
|
SNP ID:
sf0407624882(Gbrowse)
Chromosome: chr04 Position: 7624882 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 65.80% | 34.20% |
| All Indica | 738 | 43.90% | 56.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 50.79% | 49.21% |
| Indica I | 335 | 52.84% | 47.16% |
| Indica II | 206 | 28.16% | 71.84% |
| Indica Intermediate | 197 | 45.18% | 54.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407624882 | G->A | INTERGENIC | None |