Detailed information of SNP:
|
SNP ID:
sf0407625401(Gbrowse)
Chromosome: chr04 Position: 7625401 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 68.46% | 31.54% |
| All Indica | 724 | 47.10% | 52.90% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 60 | 60.00% | 40.00% |
| Indica I | 335 | 57.91% | 42.09% |
| Indica II | 200 | 31.50% | 68.50% |
| Indica Intermediate | 189 | 44.44% | 55.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407625401 | G->T | LOC_Os04g13670(LOC_Os04g13670.1) | Synonymous |