Detailed information of SNP:
|
SNP ID:
sf0407660916(Gbrowse)
Chromosome: chr04 Position: 7660916 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 98.04% | 1.96% |
| All Indica | 757 | 97.23% | 2.77% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 353 | 96.88% | 3.12% |
| Indica II | 200 | 99.00% | 1.00% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407660916 | A->G | LOC_Os04g13740(LOC_Os04g13740.1) | Non-Synonymous SNP |