Detailed information of SNP:



SNP ID: sf0407660916(Gbrowse)

Chromosome: chr04

Position: 7660916
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1375 98.04% 1.96%
All Indica757 97.23% 2.77%
All Japonica497 99.80% 0.20%
Aus66 93.94% 6.06%
Indica I353 96.88% 3.12%
Indica II200 99.00% 1.00%
Indica Intermediate204 96.08% 3.92%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0407660916 A->G LOC_Os04g13740(LOC_Os04g13740.1) Non-Synonymous SNP