Detailed information of SNP:
|
SNP ID:
sf0407663686(Gbrowse)
Chromosome: chr04 Position: 7663686 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1334 | 83.73% | 16.27% |
| All Indica | 724 | 71.41% | 28.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 326 | 75.77% | 24.23% |
| Indica II | 207 | 71.50% | 28.50% |
| Indica Intermediate | 191 | 63.87% | 36.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407663686 | T->C | LOC_Os04g13750(LOC_Os04g13750.1) | Non-Synonymous SNP |