Detailed information of SNP:
|
SNP ID:
sf0407686333(Gbrowse)
Chromosome: chr04 Position: 7686333 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1284 | 63.01% | 36.99% |
| All Indica | 689 | 34.69% | 65.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 52 | 75.00% | 25.00% |
| Indica I | 310 | 41.94% | 58.06% |
| Indica II | 192 | 26.56% | 73.44% |
| Indica Intermediate | 187 | 31.02% | 68.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 37 | 72.97% | 27.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407686333 | C->T | INTERGENIC | None |