Detailed information of SNP:
|
SNP ID:
sf0407693448(Gbrowse)
Chromosome: chr04 Position: 7693448 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 94.74% | 5.26% |
| All Indica | 771 | 91.57% | 8.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 364 | 91.76% | 8.24% |
| Indica II | 202 | 94.55% | 5.45% |
| Indica Intermediate | 205 | 88.29% | 11.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407693448 | C->A | LOC_Os04g13800(LOC_Os04g13800.1) | INTRON |