Detailed information of SNP:
|
SNP ID:
sf0407712619(Gbrowse)
Chromosome: chr04 Position: 7712619 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 91.44% | 8.56% |
| All Indica | 790 | 93.29% | 6.71% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 63 | 19.05% | 80.95% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 207 | 84.06% | 15.94% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407712619 | A->G | LOC_Os04g13830(LOC_Os04g13830.1) | INTRON |