Detailed information of SNP:
|
SNP ID:
sf0407724222(Gbrowse)
Chromosome: chr04 Position: 7724222 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 93.16% | 6.84% |
| All Indica | 755 | 87.95% | 12.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 353 | 86.40% | 13.60% |
| Indica II | 202 | 90.10% | 9.90% |
| Indica Intermediate | 200 | 88.50% | 11.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407724222 | T->C | LOC_Os04g13860(LOC_Os04g13860.1) | INTRON |