Detailed information of SNP:
|
SNP ID:
sf0407732170(Gbrowse)
Chromosome: chr04 Position: 7732170 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 96.24% | 3.76% |
| All Indica | 789 | 94.30% | 5.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407732170 | A->C | LOC_Os04g13870(LOC_Os04g13870.1) | Synonymous |