Detailed information of SNP:
|
SNP ID:
sf0407733003(Gbrowse)
Chromosome: chr04 Position: 7733003 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 77.51% | 22.49% |
| All Indica | 700 | 60.86% | 39.14% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 57 | 82.46% | 17.54% |
| Indica I | 327 | 64.53% | 35.47% |
| Indica II | 188 | 56.91% | 43.09% |
| Indica Intermediate | 185 | 58.38% | 41.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407733003 | C->T | LOC_Os04g13870(LOC_Os04g13870.1) | INTRON |