Detailed information of SNP:
|
SNP ID:
sf0407751564(Gbrowse)
Chromosome: chr04 Position: 7751564 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 95.52% | 4.48% |
| All Indica | 754 | 95.36% | 4.64% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 353 | 96.32% | 3.68% |
| Indica II | 202 | 93.56% | 6.44% |
| Indica Intermediate | 199 | 95.48% | 4.52% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407751564 | A->G | INTERGENIC | None |