Detailed information of SNP:



SNP ID: sf0407751564(Gbrowse)

Chromosome: chr04

Position: 7751564
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1363 95.52% 4.48%
All Indica754 95.36% 4.64%
All Japonica494 99.19% 0.81%
Aus63 80.95% 19.05%
Indica I353 96.32% 3.68%
Indica II202 93.56% 6.44%
Indica Intermediate199 95.48% 4.52%
Temperate Japonica334 99.40% 0.60%
Tropical Japonica93 97.85% 2.15%
Japonica Intermediate67 100.00% 0.00%
Group VI/Aromatic11 27.27% 72.73%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0407751564 A->G INTERGENIC None