Detailed information of SNP:
|
SNP ID:
sf0407761636(Gbrowse)
Chromosome: chr04 Position: 7761636 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 96.08% | 3.92% |
| All Indica | 786 | 93.38% | 6.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 369 | 97.56% | 2.44% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407761636 | A->T | LOC_Os04g13910(LOC_Os04g13910.1) | Non-Synonymous SNP |