Detailed information of SNP:
|
SNP ID:
sf0407761644(Gbrowse)
Chromosome: chr04 Position: 7761644 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 98.78% | 1.22% |
| All Indica | 779 | 97.82% | 2.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 99.46% | 0.54% |
| Indica II | 204 | 94.12% | 5.88% |
| Indica Intermediate | 205 | 98.54% | 1.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407761644 | G->T | LOC_Os04g13910(LOC_Os04g13910.1) | Non-Synonymous SNP |