Detailed information of SNP:
|
SNP ID:
sf0407778118(Gbrowse)
Chromosome: chr04 Position: 7778118 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1285 | 85.60% | 14.40% |
| All Indica | 682 | 75.07% | 24.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 55 | 87.27% | 12.73% |
| Indica I | 302 | 59.27% | 40.73% |
| Indica II | 193 | 88.60% | 11.40% |
| Indica Intermediate | 187 | 86.63% | 13.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407778118 | T->C | LOC_Os04g13930(LOC_Os04g13930.1) | Synonymous |