Detailed information of SNP:
|
SNP ID:
sf0407778997(Gbrowse)
Chromosome: chr04 Position: 7778997 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 66.24% | 33.76% |
| All Indica | 788 | 93.40% | 6.60% |
| All Japonica | 488 | 16.80% | 83.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 334 | 5.39% | 94.61% |
| Tropical Japonica | 87 | 63.22% | 36.78% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407778997 | T->C | LOC_Os04g13930(LOC_Os04g13930.1) | Non-Synonymous SNP |