Detailed information of SNP:
|
SNP ID:
sf0407779336(Gbrowse)
Chromosome: chr04 Position: 7779336 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 96.04% | 3.96% |
| All Indica | 795 | 96.48% | 3.52% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407779336 | C->T | LOC_Os04g13930(LOC_Os04g13930.1) | Non-Synonymous SNP |